miRBase entry: mdm-MIR395h

Stem-loop mdm-MIR395h


Accession
MI0023091
Description
Malus domestica mdm-MIR395h precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
5 open access papers mention mdm-MIR395h
(49 sentences)

Sequence

ucaggugucaccaagaguucccuwgaccacuucauugggaaauagucuauuuugcaacuauauauccuaCUGAAGUGUUUGGGGGAACUCcugucgacauuuga
(((((((((..((.(((((((((.((.(((((((.(((((.(((((..........)))))...))))).))))))).)).))))))))).))..)))))))))

Structure
         ac  a         w  c       u     --a     cuau 
ucagguguc  ca gaguucccu ga cacuuca uggga   auagu    u
|||||||||  || ||||||||| || ||||||| |||||   |||||     
aguuuacag  gu CUCAAGGGG UU GUGAAGU auccu   uauca    u
         cu  c         G  U       C     aua     acgu 


Annotation confidence Not enough data
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Genome context
MDC003846.250: 12137-12240 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from mdm-MIR395h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdm-miR395h

Accession MIMAT0025987
Description Malus domestica mdm-miR395h mature miRNA
Sequence 70 - CUGAAGUGUUUGGGGGAACUC - 90
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47