miRBase entry: mdm-MIR395g

Stem-loop mdm-MIR395g


Accession
MI0023090
Description
Malus domestica mdm-MIR395g precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
5 open access papers mention mdm-MIR395g
(49 sentences)

Sequence

gaaaagaauaaggucugcaaugcuaucagguguuaccaagaGUUCCCUUGACCACUUCAUUGggaaauagucucuuuuguaacuauaaauccuaCUGAAGUGUUUGGGGGAACUCcugguugcauuugauuuuacaaagaacaaaaauuauc
.............(((........(((((((((.((((.((((((((((((.(((((((.(((((.(((((..(....)..)))))...))))).))))))).)))))))))))).)))).))))))))).......)))............

Structure
gaaaagaauaagg   gcaaugcu         u    a            C       U     --a     cu u 
             ucu        aucaggugu acca gaGUUCCCUUGA CACUUCA UGgga   auagu  c u
             |||        ||||||||| |||| |||||||||||| ||||||| |||||   |||||  |  
             aga        uaguuuacg uggu CUCAAGGGGGUU GUGAAGU auccu   uauca  g u
-cuauuaaaaaca   -aacauuu         u    c            U       C     aaa     au u 


Annotation confidence Not enough data
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Genome context
MDC003846.250: 11880-12031 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from mdm-MIR395g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdm-miR395g-3p

Accession MIMAT0025986
Description Malus domestica mdm-miR395g-3p mature miRNA
Sequence 95 - CUGAAGUGUUUGGGGGAACUC - 115
Evidence experimental
miRNAseq [1]

Mature mdm-miR395g-5p

Accession MIMAT0037470
Description Malus domestica mdm-miR395g-5p mature miRNA
Sequence 42 - GUUCCCUUGACCACUUCAUUG - 62
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47

  2. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812