miRBase entry: mdm-MIR395b

Stem-loop mdm-MIR395b


Accession
MI0023085
Description
Malus domestica mdm-MIR395b precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
5 open access papers mention mdm-MIR395b
(49 sentences)

Sequence

aucagcuguccccuggaguuucccugaccacuucauugggaugaaucauccmaaaacccuuccacugaaggugaaauuccaugcagcaugcaugcaucgcaCUGAAGUGUUUGGGGGAACUCcgguuggcaucugau
(((((.((((..(((((((((((((((.(((((((.((.((((..............(((((....)))))........((((((...)))))))))).)).))))))).)))))))))))))))..)))).)))))

Structure
     c    cc               c       u  g    aaucauccmaaaacccuuccacugaaggugaaauuc      g 
aucag uguc  cuggaguuucccuga cacuuca ug gaug                                    caugca  
||||| ||||  ||||||||||||||| ||||||| || ||||                                    |||||| c
uaguc acgg  ggcCUCAAGGGGGUU GUGAAGU ac cuac                                    guacgu  
     u    uu               U       C  g    ------------------------------------      a 


Annotation confidence Not enough data
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Genome context
MDC003846.250: 18712-18848 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from mdm-MIR395b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdm-miR395b

Accession MIMAT0025981
Description Malus domestica mdm-miR395b mature miRNA
Sequence 102 - CUGAAGUGUUUGGGGGAACUC - 122
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47