miRBase entry: mdm-MIR390f

Stem-loop mdm-MIR390f


Accession
MI0023078
Description
Malus domestica mdm-MIR390f precursor miRNA
Gene family
MIPF0000101; MIR390

Literature search
5 open access papers mention mdm-MIR390f
(40 sentences)

Sequence

aguguggaagaaucuguuAAGCUCAGGAGGGAUAGCGCCauucucgguuugguuuaaccacguaucgcgcuauccaucuugggcuucauggcuucuucuuacu
((((.(((((((.((((.((((((((((.(((((((((.((....((((......))))....)).))))))))).)))))))))).)))).)))))))))))

Structure
    u       u    u          G         C  ucuc    ug 
agug ggaagaa cugu AAGCUCAGGA GGAUAGCGC au    gguu  g
|||| ||||||| |||| |||||||||| ||||||||| ||    ||||   
ucau ucuucuu ggua uucggguucu ccuaucgcg ua    ccaa  u
    -       c    c          a         c  ugca    uu 


Annotation confidence Not enough data
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Genome context
MDC000913.253: 2561-2663 [+]

Database links

Mature mdm-miR390f

Accession MIMAT0025974
Description Malus domestica mdm-miR390f mature miRNA
Sequence 19 - AAGCUCAGGAGGGAUAGCGCC - 39
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47