miRBase entry: mdm-MIR390d

Stem-loop mdm-MIR390d


Accession
MI0023076
Description
Malus domestica mdm-MIR390d precursor miRNA
Gene family
MIPF0000101; MIR390

Literature search
5 open access papers mention mdm-MIR390d
(40 sentences)

Sequence

aguaagggaggaucuguaAAGCUCAGGAGGGAUAGCGCCagaugaauuaaccaagauucuaacaauuaagcguuuauuuggucaucaucugargcuauccauccugaguuucauggcuucuucuuacu
(((((((.((((.((((.((((((((((.(((((((..(((((((....((((((.....(((........)))..))))))..)))))))..))))))).)))))))))).)))).)))))))))))

Structure
       g    u    a          G       GC       auua      auucu   aau 
aguaagg agga cugu AAGCUCAGGA GGAUAGC  Cagauga    accaag     aac   u
||||||| |||| |||| |||||||||| |||||||  |||||||    ||||||     |||    
ucauucu ucuu ggua uuugaguccu ccuaucg  gucuacu    ugguuu     uug   a
       -    c    c          a       ra       --ac      ---au   cga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mdm-miR390d

Accession MIMAT0025972
Description Malus domestica mdm-miR390d mature miRNA
Sequence 19 - AAGCUCAGGAGGGAUAGCGCC - 39
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47