Stem-loop mdm-MIR169c

Accession

MI0023040

Description

Malus domestica mdm-MIR169c precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

4 open access papers mention mdm-MIR169c
(9 sentences)

Sequence

gcaggaagcuggaggccuuacaugaagaaaagagcguuguuuggUAGCCAAGGAUGACUUGCCCGccuccgauuucaugaaagaauauauggcauuauuuaauugucugucuaaaauuuauauucauguuuggaauccaggcagucuccuuggcuaaucucacaggcucuuuucuuucaugcuaggcccuccucuucuuc
..((((((..((((((((..(((((((((((((((.((((..((((((((((((.((((.(((....(((((...((((((.((((....((((.((......))..))))....))))...)))))).))))).....)))))))))))))))).)))..))))))))))))).))))))..))).))))).)))))).

Structure

gc      cu     -   ua      -         g    uu   -         U    U   -CGcc     uuu      --a    auau    -u  uu 
  aggaag  ggagg ccu  caugaa gaaaagagc uugu  ggU AGCCAAGGA GACU GCC     uccga   caugaa   gaau    ggca  ua  u
  ||||||  ||||| |||  |||||| ||||||||| ||||  ||| ||||||||| |||| |||     |||||   ||||||   ||||    ||||  ||   
  uucuuc  ccucc gga  guacuu cuuuucucg gaca  cua ucgguuccu cuga cgg     agguu   guacuu   uuua    cugu  gu  a
-c      -u     c   uc      u         -    cu   a         -    -   accua     --u      aua    aaau    cu  ua 

Annotation confidence Not enough data

Genome context

MDC001494.456: 32568-32767 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR169c

Mature mdm-miR169c

• Accession: MIMAT0025936
• Description: Malus domestica mdm-miR169c mature miRNA
• Sequence: 45 - UAGCCAAGGAUGACUUGCCCG - 65
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47