Stem-loop mdm-MIR169b

Accession

MI0023039

Description

Malus domestica mdm-MIR169b precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

4 open access papers mention mdm-MIR169b
(9 sentences)

Sequence

ggaagagaugucaaacauggaagaaggagccuuguuuggUAGCCAAGGAUGAUUUGCCUGCagccucgauccuaaagaguaaagagguuuauuacacgauaaaaaucagaaaaacccuaguugaguucucaggcagucacgccuuggcgacgugacaagcucuucucucucaugcuaggcugcucucuucc
((((((((.(((...(((((.(((((((((.(((((..((.(((((((.(((((.(((((.((.((((((.............((..((((((....))))))..))............))))))..))))))))))))..))))))).))..))))))))))).))).)))))...)))...))))))))

Structure

        --u   aaa     a   -      c     ug  A       -A     U     C  -c      ccuaaagaguaaa  gg      a 
ggaagaga   guc   caugg aga aggagc uuguu  gU GCCAAGG  UGAUU GCCUG ag  cucgau             ga  uuuauu c
||||||||   |||   ||||| ||| |||||| |||||  || |||||||  ||||| ||||| ||  ||||||             ||  ||||||  
ccuucucu   cgg   guacu ucu uucucg aacag  ca cgguucc  acuga cggac uc  gaguug             cu  aaauag a
        cgu   auc     c   c      -     ug  g       gc     -     -  uu      -aucccaaaaaga  aa      c 

Annotation confidence Not enough data

Genome context

MDC011066.417: 15262-15452 [+]

Mature mdm-miR169b

• Accession: MIMAT0025935
• Description: Malus domestica mdm-miR169b mature miRNA
• Sequence: 40 - UAGCCAAGGAUGAUUUGCCUGC - 61
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47