miRBase entry: mdm-MIR166d

Stem-loop mdm-MIR166d


Accession
MI0023020
Description
Malus domestica mdm-MIR166d precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
7 open access papers mention mdm-MIR166d
(35 sentences)

Sequence

gguuauugaggggaauguuguuuggcucgaggccccuagcuagaucuaugaucuccaucucaauuggcgacaauuuuaaccaccaaccuuaaaaaauuuacaguaccaguugagaaagaucaucgauucuacguuuaacgaccUCGGACCAGGCUUCAUUCCCCccaauuacu
(((.((((.((((((((..((((((.(((((((....(((((((((.(((((((...((((((((((..((((((((...............))))))....)).)))))))))).))))))).)).)))).)))....).)))))).))))))..)))))))).)))).)))

Structure
   u    a        uu      c      - cccu   -    -  u       cca          cg  ----      aaccac 
ggu auug ggggaaug  guuugg ucgagg c    agc uaga uc augaucu   ucucaauugg  ac    aauuuu      c
||| |||| ||||||||  |||||| |||||| |    ||| |||| || |||||||   ||||||||||  ||    ||||||      a
uca uaac CCCCUUAC  CGGACC GGCUcc g    uug aucu ag uacuaga   agaguugacc  ug    uuaaaa      a
   u    c        UU      A      a caau   c    u  c       --a          -a  acau      aauucc 


Annotation confidence Not enough data
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Genome context
MDC009861.462: 128-300 [+]

Database links

Mature mdm-miR166d

Accession MIMAT0025916
Description Malus domestica mdm-miR166d mature miRNA
Sequence 144 - UCGGACCAGGCUUCAUUCCCC - 164
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47