miRBase entry: mdm-MIR156ae

Stem-loop mdm-MIR156ae


Accession
MI0023001
Description
Malus domestica mdm-MIR156ae precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
14 open access papers mention mdm-MIR156ae
(299 sentences)

Sequence

gguuugkaaagaaggUGACAGAAGAAAGUGAGCACacgugguucuuuucuugcaugaauccaugucagaagcucuauguguucauucucuaucugucaccuaccauccuuaacc
((((........(((((((((((((.((((((((((..(((..(((((...(((((....))))).)))))..))))))))))))).))).)))))))))).........))))

Structure
    -ugkaaaga          -   A          cg   uu     cuu     a 
gguu         aggUGACAGA AGA AGUGAGCACa  ugg  cuuuu   gcaug a
||||         |||||||||| ||| ||||||||||  |||  |||||   |||||  
ccaa         uccacugucu ucu uuacuugugu  auc  gaaga   uguac u
    uuccuacca          a   c          --   uc     --c     c 


Annotation confidence Not enough data
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Genome context
MDC013721.403: 6597-6710 [-]

Database links

Mature mdm-miR156ae

Accession MIMAT0025897
Description Malus domestica mdm-miR156ae mature miRNA
Sequence 16 - UGACAGAAGAAAGUGAGCAC - 35
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47