miRBase entry: mdm-MIR156o

Stem-loop mdm-MIR156o


Accession
MI0022985
Description
Malus domestica mdm-MIR156o precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
14 open access papers mention mdm-MIR156o
(299 sentences)

Sequence

gacggUGACAGAAGAGAGUGAGCACacaugguauuuucuugcaugcuggguucaugcuugaagcuuugcgugcuuacucucuaucugucaccauc
...((((((((((((((((((((((.((.(((...(((..(((((.......)))))..)))))).)).))))))))))))).)))))))))...

Structure
gac         -             a  u   auu   uu     cu 
   ggUGACAGA AGAGAGUGAGCAC ca ggu   uuc  gcaug  g
   ||||||||| ||||||||||||| || |||   |||  |||||  g
   ccacugucu ucucucauucgug gu ucg   aag  cguac  g
cua         a             c  u   ---   uu     uu 


Annotation confidence Not enough data
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Genome context
MDC011231.822: 32335-32429 [+]

Database links

Mature mdm-miR156o

Accession MIMAT0025881
Description Malus domestica mdm-miR156o mature miRNA
Sequence 6 - UGACAGAAGAGAGUGAGCAC - 25
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47