miRBase entry: mdm-MIR156k

Stem-loop mdm-MIR156k


Accession
MI0022981
Description
Malus domestica mdm-MIR156k precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
14 open access papers mention mdm-MIR156k
(300 sentences)

Sequence

guguuaauuugguugggacuuaggguagaaauUGACAGAAGAGAGUGAGCACayagaggcacuuugccauaaagcguaugccauugcuuuugcgugcucaugucucuuucugucagcuuccccauuuccacygccggauuaauau
(((((((((((((.((((..(.(((..(((.(((((((((((((((((((((..(((((((...((.((((.....)))).)).)))))))..)))))))).)))).))))))))).)))))))..))).).)))))))))))))

Structure
             u -   cu a   ua   a         -    -        ay       cuu  c    a 
guguuaauuuggu g gga  u ggg  gaa uUGACAGAA GAGA GUGAGCAC  agaggca   ug caua a
||||||||||||| | |||  | |||  ||| ||||||||| |||| ||||||||  |||||||   || |||| g
uauaauuaggccg c ccu  a ccc  cuu gacugucuu cucu uacucgug  uuuucgu   ac guau c
             y a   uu -   --   c         u    g        cg       --u  c    g 


Annotation confidence Not enough data
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Genome context
MDC022169.138: 7386-7530 [+]

Database links

Mature mdm-miR156k

Accession MIMAT0025877
Description Malus domestica mdm-miR156k mature miRNA
Sequence 33 - UGACAGAAGAGAGUGAGCAC - 52
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47