Stem-loop sequence mmu-mir-7079

Accession

MI0022929 (change log)

Symbol

MGI:Mir7079

Description

Mus musculus miR-7079 stem-loop

Stem-loop

   ---ccc       u    -   u    --------    u 
5'       ggagggc gagg cag gagu        ccug g
         ||||||| |||| ||| ||||        ||||  
3'       ucucuug cuuc guc cucg        ggac c
   gaccuu       u    a   -    gauguccu    a 

Deep sequencing

136 reads, 6.67 reads per million, 45 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr8: 123104975-123105043 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000064647 ; AC114005.5-001; intron 1

  OTTMUST00000039780 ; Rpl13-002; exon 3

  OTTMUST00000039779 ; Rpl13-001; intron 5

  ENSMUST00000127664 ; Gm20388-001; intron 1

  ENSMUST00000129311 ; Rpl13-002; exon 3

  ENSMUST00000000756 ; Rpl13-001; intron 5

Database links

• MGI:Mir7079
• miRBase Tracker:MI0022929

Mature sequence mmu-miR-7079-5p

• Accession: MIMAT0028064
• Sequence: 6 - agggcugaggcagugaguccug - 27
• Deep sequencing: 78 reads, 31 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7079-5p
  • miRDB:mmu-miR-7079-5p

Mature sequence mmu-miR-7079-3p

• Accession: MIMAT0028065
• Sequence: 49 - ugacuucuguucucuuuccag - 69
• Deep sequencing: 51 reads, 17 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7079-3p
  • miRDB:mmu-miR-7079-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).