Stem-loop sequence mmu-mir-7077

Accession

MI0022927 (change log)

Symbol

MGI:Mir7077

Description

Mus musculus miR-7077 stem-loop

Stem-loop

   uag    a  uc      c   cuauuc 
5'    gcca gg  ccaugg agg      c
      |||| ||  |||||| |||      c
3'    cggu cc  gguacc ucc      u
   -ga    -  uc      u   acacag 

Deep sequencing

15 reads, 0 reads per million, 13 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr8: 117453023-117453079 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000095172 ; Cmip-201; intron 15

  ENSMUST00000166750 ; Cmip-202; intron 15

Clustered miRNAs

< 10kb from mmu-mir-7077

• mmu-mir-7077: chr8: 117453023-117453079 [+]
• mmu-mir-7078: chr8: 117459265-117459328 [+]

Database links

• MGI:Mir7077
• miRBase Tracker:MI0022927

Mature sequence mmu-miR-7077-5p

• Accession: MIMAT0028060
• Sequence: 3 - ggccaaggucccauggcaggc - 23
• Deep sequencing: 9 reads, 9 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7077-5p
  • miRDB:mmu-miR-7077-5p

Mature sequence mmu-miR-7077-3p

• Accession: MIMAT0028061
• Sequence: 38 - ccuuccauggcuccuggcag - 57
• Deep sequencing: 6 reads, 5 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7077-3p
  • miRDB:mmu-miR-7077-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).