Stem-loop sequence mmu-mir-7000

Accession

MI0022848 (change log)

Symbol

MGI:Mir7000

Description

Mus musculus miR-7000 stem-loop

Stem-loop

   agag a           uc   --aca    uu 
5'     g ggggacaggua  ugg     gagg  c
       | |||||||||||  |||     ||||   
3'     c cuccuguccgu  acc     cucc  u
   --ga -           cc   cacga    cg 

Deep sequencing

38 reads, 0 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 92387384-92387446 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000034345 ; Mapk8ip1-002; intron 4

  OTTMUST00000034344 ; Mapk8ip1-001; intron 4

  ENSMUST00000111279 ; Mapk8ip1-002; intron 4

  ENSMUST00000050312 ; Mapk8ip1-001; intron 4

Database links

• MGI:Mir7000
• miRBase Tracker:MI0022848

Mature sequence mmu-miR-7000-5p

• Accession: MIMAT0027902
• Sequence: 6 - aggggacagguaucuggacaga - 27
• Deep sequencing: 28 reads, 7 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7000-5p
  • miRDB:mmu-miR-7000-5p

Mature sequence mmu-miR-7000-3p

• Accession: MIMAT0027903
• Sequence: 42 - cacccaccugccuguccuccag - 63
• Deep sequencing: 8 reads, 4 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7000-3p
  • miRDB:mmu-miR-7000-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).