Stem-loop sequence mmu-mir-6991

Accession

MI0022839 (change log)

Symbol

MGI:Mir6991

Description

Mus musculus miR-6991 stem-loop

Literature search

2 open access papers mention mmu-mir-6991
(2 sentences)

Stem-loop

   agcag      aca     --u    c  -a   au   a 
5'      uggaga   gggac   gggc ug  uug  ggc c
        ||||||   |||||   |||| ||  |||  |||  
3'      accucu   ucuug   cccg ac  aac  ucg u
   ----g      ---     uuu    -  gg   -c   c 

Deep sequencing

90 reads, 0 reads per million, 39 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr19: 7422573-7422642 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000086884 ; AC129188.1-004; intron 1

  OTTMUST00000086881 ; AC129188.1-001; intron 2

  OTTMUST00000086882 ; AC129188.1-002; intron 4

  ENSMUST00000161907 ; 2700081O15Rik-004; intron 1

  ENSMUST00000160561 ; 2700081O15Rik-001; intron 2

  ENSMUST00000159348 ; 2700081O15Rik-002; intron 4

Database links

• MGI:Mir6991
• miRBase Tracker:MI0022839

Mature sequence mmu-miR-6991-5p

• Accession: MIMAT0027884
• Sequence: 6 - uggagaacagggacugggccug - 27
• Deep sequencing: 72 reads, 33 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6991-5p
  • miRDB:mmu-miR-6991-5p

Mature sequence mmu-miR-6991-3p

• Accession: MIMAT0027885
• Sequence: 49 - gcagcccuuuguucuucuccag - 70
• Deep sequencing: 17 reads, 10 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6991-3p
  • miRDB:mmu-miR-6991-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).