Stem-loop sequence mmu-mir-6974

Accession

MI0022822 (change log)

Symbol

MGI:Mir6974

Description

Mus musculus miR-6974 stem-loop

Stem-loop

   g  a     c      u      ugcugggguggccuagcu 
5'  ug ggcag aagaga uggggg                  a
    || ||||| |||||| ||||||                   
3'  ac cuguc uucucu accucu                  a
   g  c     -      c      ccugagauccugagacuc 

Deep sequencing

85 reads, 16.7 reads per million, 24 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr17: 35204475-35204557 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000095890 ; Lta-001; intron 2

  ENSMUST00000025266 ; Lta-001; intron 2

Clustered miRNAs

< 10kb from mmu-mir-6974

• mmu-mir-6974: chr17: 35204475-35204557 [-]
• mmu-mir-6973a: chr17: 35194972-35195049 [+]

Database links

• MGI:Mir6974
• miRBase Tracker:MI0022822

Mature sequence mmu-miR-6974-5p

• Accession: MIMAT0027850
• Sequence: 1 - gugaggcagcaagagauugggggu - 24
• Deep sequencing: 59 reads, 16 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6974-5p
  • miRDB:mmu-miR-6974-5p

Mature sequence mmu-miR-6974-3p

• Accession: MIMAT0027851
• Sequence: 62 - ucuccacucucuucugucccag - 83
• Deep sequencing: 5 reads, 5 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6974-3p
  • miRDB:mmu-miR-6974-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).