Stem-loop sequence mmu-mir-6965

Accession

MI0022812 (change log)

Symbol

MGI:Mir6965

Description

Mus musculus miR-6965 stem-loop

Stem-loop

   gcg    agg      auu g       augag 
5'    ggag   gaggcu   g gcaggag     g
      ||||   ||||||   | |||||||      
3'    ccuc   cucugg   c ugucuuc     a
   -ga    --g      -cu g       caaga 

Deep sequencing

53 reads, 0 reads per million, 27 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr17: 24240884-24240947 [-]
• Overlapping transcripts:

  sense

  ENSMUST00000115390 ; Ccnf-201; intron 6

Clustered miRNAs

< 10kb from mmu-mir-6965

• mmu-mir-6965: chr17: 24240884-24240947 [-]
• mmu-mir-5134: chr17: 24234527-24234604 [-]

Database links

• MGI:Mir6965
• miRBase Tracker:MI0022812

Mature sequence mmu-miR-6965-5p

• Accession: MIMAT0027830
• Sequence: 6 - agagggaggcuauugggcaggaga - 29
• Deep sequencing: 7 reads, 5 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6965-5p
  • miRDB:mmu-miR-6965-5p

Mature sequence mmu-miR-6965-3p

• Accession: MIMAT0027831
• Sequence: 43 - ucugugcucggucucgcuccag - 64
• Deep sequencing: 27 reads, 19 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6965-3p
  • miRDB:mmu-miR-6965-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).