Stem-loop mmu-mir-6939

Accession

MI0022786

Symbol

MGI: Mir6939

Description

Mus musculus mmu-mir-6939 precursor miRNA

Literature search

1 open access papers mention mmu-mir-6939
(1 sentences)

Sequence

34 reads, 7 reads per million, 26 experiments

gagcCAGGCAGCUGGUUGGUGGAAGccaugcaacagcgcccccaggugccugaggCCUCACUUGACCCGCUGCAG
.......(((((.(((((((((..(((...((...(((((....))))).)).))).)))).))))).)))))..

Structure

gagcCAG     U     -    AA   aug  aca     c 
       GCAGC GGUUG GUGG  Gcc   ca   gcgcc c
       ||||| ||||| ||||  |||   ||   |||||  
       CGUCG CCAGU CACU  Cgg   gu   cgugg c
-----GA     C     U    -C   --a  --c     a 

Annotation confidence Not enough data

Genome context

chr12: 112659277-112659351 [-]

Mature mmu-miR-6939-5p

• Accession: MIMAT0027778
• Description: Mus musculus mmu-miR-6939-5p mature miRNA
• Sequence: 5 - CAGGCAGCUGGUUGGUGGAAG - 25
• Evidence: experimental ; meta-analysis [1]

Mature mmu-miR-6939-3p

• Accession: MIMAT0027779
• Description: Mus musculus mmu-miR-6939-3p mature miRNA
• Sequence: 56 - CCUCACUUGACCCGCUGCAG - 75
• Evidence: experimental ; meta-analysis [1]

References

1. PubMed ID: 22955976
   Discovery of hundreds of mirtrons in mouse and human small RNA data
   "Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC"
   "Genome Res (2012) 22:1634-1645