Stem-loop sequence mmu-mir-6919

Accession

MI0022766 (change log)

Symbol

MGI:Mir6919

Description

Mus musculus miR-6919 stem-loop

Stem-loop

   ugcg  a     cu     u   auu     ug 
5'     gu ggcca  ggagg gga   gucuc  c
       || |||||  ||||| |||   |||||  c
3'     ca ccggu  ccucc ccu   cggag  u
   --ga  c     --     u   ---     uc 

Deep sequencing

17 reads, 0 reads per million, 14 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr11: 50232245-50232306 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000072792 ; Mgat4b-005; intron 5

  OTTMUST00000012384 ; Mgat4b-001; intron 6

  ENSMUST00000151803 ; Mgat4b-005; intron 5

  ENSMUST00000041725 ; Mgat4b-001; intron 6

Database links

• MGI:Mir6919
• miRBase Tracker:MI0022766

Mature sequence mmu-miR-6919-5p

• Accession: MIMAT0027738
• Sequence: 6 - uaggccacuggagguggaauugu - 28
• Deep sequencing: 13 reads, 12 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6919-5p
  • miRDB:mmu-miR-6919-5p

Mature sequence mmu-miR-6919-3p

• Accession: MIMAT0027739
• Sequence: 42 - gcuccuccuccuggcccacag - 62
• Deep sequencing: 3 reads, 3 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6919-3p
  • miRDB:mmu-miR-6919-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).