Stem-loop sequence mmu-mir-6909

Accession

MI0022756 (change log)

Symbol

MGI:Mir6909

Description

Mus musculus miR-6909 stem-loop

Literature search

1 open access papers mention mmu-mir-6909
(1 sentences)

Stem-loop

   gauaaca          aau      ugc  a 
5'        ggggggcugg   gggcac   gg g
          ||||||||||   ||||||   ||  
3'        cccuccggcc   uccgug   cc a
   ---gaca          ccu      -ua  a 

Deep sequencing

130 reads, 0 reads per million, 41 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr10: 79531029-79531090 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000089469 ; Ppap2c-003; intron 1

  OTTMUST00000089467 ; Ppap2c-001; intron 1

  OTTMUST00000089468 ; Ppap2c-002; intron 1

  OTTMUST00000089471 ; Ppap2c-005; intron 1

  ENSMUST00000163602 ; Ppap2c-003; intron 1

  ENSMUST00000063879 ; Ppap2c-001; intron 1

  ENSMUST00000166804 ; Ppap2c-002; intron 1

  ENSMUST00000165233 ; Ppap2c-005; intron 1

Database links

• MGI:Mir6909
• miRBase Tracker:MI0022756

Mature sequence mmu-miR-6909-5p

• Accession: MIMAT0027718
• Sequence: 6 - caggggggcuggaaugggcacu - 27
• Deep sequencing: 123 reads, 40 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6909-5p
  • miRDB:mmu-miR-6909-5p

Mature sequence mmu-miR-6909-3p

• Accession: MIMAT0027719
• Sequence: 41 - ugccuuccccggccucccacag - 62
• Deep sequencing: 6 reads, 5 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6909-3p
  • miRDB:mmu-miR-6909-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).