Stem-loop sequence hsa-mir-6865

Accession

MI0022712 (change log)

Symbol

HGNC:MIR6865

Description

Homo sapiens miR-6865 stem-loop

Literature search

2 open access papers mention hsa-mir-6865
(4 sentences)

Stem-loop

   aucca       c  ---       acu   -  u 
5'      uaggugg ag   aggaggg   uca ga g
        ||||||| ||   |||||||   ||| ||  
3'      auccgcc uc   uucuccc   agu cu c
   --gac       a  ccu       -ac   a  u 

Deep sequencing

86 reads, 0 reads per million, 36 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr17: 4970086-4970150 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-6865

• hsa-mir-6865: chr17: 4970086-4970150 [-]
• hsa-mir-6864: chr17: 4969702-4969771 [-]

Database links

• HGNC:MIR6865
• miRBase Tracker:MI0022712

Mature sequence hsa-miR-6865-5p

• Accession: MIMAT0027630
• Sequence: 6 - uagguggcagaggagggacuuca - 28
• Deep sequencing: 64 reads, 32 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6865-5p
  • miRDB:hsa-miR-6865-5p

Mature sequence hsa-miR-6865-3p

• Accession: MIMAT0027631
• Sequence: 40 - acacccucuuucccuaccgcc - 60
• Deep sequencing: 19 reads, 15 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6865-3p
  • miRDB:hsa-miR-6865-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).