Stem-loop sequence hsa-mir-6511b-1

Accession

MI0022552 (change log)

Symbol

HGNC:MIR6511B1

Description

Homo sapiens miR-6511b-1 stem-loop

Gene family

MIPF0001382; mir-6511

Literature search

1 open access papers mention hsa-mir-6511b-1
(1 sentences)

Stem-loop

     ga  gg  c            u   - c   ca    agag 
5' gg  cg  gc ugcaggcagaag ggg g uga  gggc    g
   ||  ||  || |||||||||||| ||| | |||  ||||     
3' uc  gu  cg acguccgucuuc ccc c acu  cccg    g
     gg  gg  -            -   a c   cc    cguu 

Deep sequencing

2957 reads, 5.26 reads per million, 152 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr16: 2106669-2106753 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000319853 ; TSC2-009; 3'UTR (exon 2)

  OTTHUMT00000250658 ; TSC2-002; exon 5

  OTTHUMT00000319845 ; TSC2-007; 3'UTR (exon 7)

  OTTHUMT00000434564 ; TSC2-017; 3'UTR (exon 7)

  OTTHUMT00000250657 ; TSC2-001; 3'UTR (exon 8)

  OTTHUMT00000319841 ; TSC2-003; 3'UTR (exon 8)

  OTTHUMT00000319842 ; TSC2-004; 3'UTR (exon 8)

  OTTHUMT00000319844 ; TSC2-006; 3'UTR (exon 8)

  ENST00000467949 ; TSC2-009; 3'UTR (exon 2)

  ENST00000439117 ; TSC2-002; exon 5

  ENST00000382538 ; TSC2-007; 3'UTR (exon 7)

  ENST00000439673 ; TSC2-017; 3'UTR (exon 7)

  ENST00000219476 ; TSC2-001; 3'UTR (exon 8)

  ENST00000401874 ; TSC2-003; 3'UTR (exon 8)

  ENST00000350773 ; TSC2-004; 3'UTR (exon 8)

  ENST00000568454 ; TSC2-006; 3'UTR (exon 8)

  ENST00000353929 ; TSC2-201; 3'UTR (exon 8)

Database links

• HGNC:MIR6511B1
• RNAcentral:URS000075D50D_9606
• miRBase Tracker:MI0022552

Mature sequence hsa-miR-6511b-5p

• Accession: MIMAT0025847
• Sequence: 11 - cugcaggcagaaguggggcugaca - 34
• Deep sequencing: 976 reads, 69 experiments
• Evidence: experimental; meta-analysis [1]
• Database links:
  • RNAcentral:URS0000759A05_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-6511b-5p
  • miRDB:hsa-miR-6511b-5p

Mature sequence hsa-miR-6511b-3p

• Accession: MIMAT0025848
• Sequence: 53 - ccucaccaccccuucugccugca - 75
• Deep sequencing: 4212 reads, 147 experiments
• Evidence: experimental; meta-analysis [1]
• Database links:
  • RNAcentral:URS0000759CCE_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-6511b-3p
  • miRDB:hsa-miR-6511b-3p

References

1. PMID:22313525 "Deep sequencing analysis of small non-coding RNAs reveals the diversity of microRNAs and piRNAs in the human epididymis" Li Y, Wang HY, Wan FC, Liu FJ, Liu J, Zhang N, Jin SH, Li JY Gene. 497:330-335(2012).