Stem-loop gga-mir-458b

Accession

MI0022541

Description

Gallus gallus gga-mir-458b precursor miRNA

Gene family

MIPF0000179; mir-458

Literature search

3 open access papers mention gga-mir-458b
(3 sentences)

Sequence

132852 reads, 2 reads per million, 5 experiments

augcuguuuuuccaguacauauggcAGUACCAUUCAAAGAGCUAUGAcaaugacgcuguuuAUAGCUCUGAAAAUGGCGCUGccaucugcaccacggccgcg
..(((((.....(((.....((((((((.(((((...((((((((((((.......)).))))))))))...))))).)))))))))))....)))))....

Structure

--au     uuuuc   uacau        A     CAA          -  au 
    gcugu     cag     auggcAGU CCAUU   AGAGCUAUGA ca  g
    |||||     |||     |||||||| |||||   |||||||||| ||  a
    cggca     guc     uaccGUCG GGUAA   UCUCGAUAuu gu  c
gcgc     -ccac   -----        C     AAG          u  cg 

Annotation confidence High

Genome context

chr13: 8233317-8233418 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-458b

Mature gga-miR-458b-5p

• Accession: MIMAT0025830
• Description: Gallus gallus gga-miR-458b-5p mature miRNA
• Sequence: 26 - AGUACCAUUCAAAGAGCUAUGA - 47
• Evidence: experimental ; Illumina [1]

Mature gga-miR-458b-3p

• Accession: MIMAT0025831
• Description: Gallus gallus gga-miR-458b-3p mature miRNA
• Sequence: 62 - AUAGCUCUGAAAAUGGCGCUG - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227