miRBase entry: gga-mir-6685

Stem-loop gga-mir-6685


Accession
MI0022506
Description
Gallus gallus gga-mir-6685 precursor miRNA


Sequence

12 reads, 1 reads per million, 4 experiments
caucagcgcuguacccgagcCAGCAAUGCACGUGUACUCAGagacggaauuccUGGUGACGCGGGCAUUGCUGCuugguucaggucauugcacacacaca
.....(((.((.(((.(((((((((((((.(((((((.(((.((......))))))).))))).)))))))....)))))).))))).))).........

Structure
----cauca   c  u   c      ----       A     -  U   a  cg 
         gcg ug acc gagcCA    GCAAUGC CGUGU AC CAG ga  g
         ||| || ||| ||||||    ||||||| ||||| || ||| ||   
         cgu ac ugg cuuggu    CGUUACG GCGCA UG GUc cu  a
acacacaca   u  -   a      uCGU       G     G  -   -  ua 


Annotation confidence Not enough data
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Genome context
chr5: 25026259-25026358 [+]

Database links

Mature gga-miR-6685-5p

Accession MIMAT0025790
Description Gallus gallus gga-miR-6685-5p mature miRNA
Sequence 21 - CAGCAAUGCACGUGUACUCAG - 41
Evidence experimental
Illumina [1]

Mature gga-miR-6685-3p

Accession MIMAT0025791
Description Gallus gallus gga-miR-6685-3p mature miRNA
Sequence 54 - UGGUGACGCGGGCAUUGCUGC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227