miRBase entry: gga-mir-6683

Stem-loop gga-mir-6683


Accession
MI0022504
Description
Gallus gallus gga-mir-6683 precursor miRNA


Sequence

3 reads, 1 reads per million, 2 experiments
acagucuuugucucaaagggaaacggcguuggucucccagucuguuggugauucugcuacuucaUCAGAGCCUGGGAGUAAACGUgguccugugacaagugcagcagaac
...((.((((((....(((...((.(((((...(((((((.((.(((((((..........))))))))).)))))))..))))).)))))..)))))).))........

Structure
-----aca  c      ucaa   gaa  g     ggu       u  g       uucu 
        gu uuuguc    agg   ac gcguu   cucccag cu uugguga    g
        || ||||||    |||   || |||||   ||||||| || |||||||     
        cg gaacag    ucc   ug UGCAA   GAGGGUC GA GACUacu    c
caagacga  u      --ug   ---  g     -AU       C  -       ucau 


Annotation confidence Not enough data
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Genome context
chr5: 30173954-30174063 [+]

Database links

Mature gga-miR-6683-3p

Accession MIMAT0025788
Description Gallus gallus gga-miR-6683-3p mature miRNA
Sequence 65 - UCAGAGCCUGGGAGUAAACGU - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227