miRBase entry: gga-mir-6681

Stem-loop gga-mir-6681


Accession
MI0022502
Description
Gallus gallus gga-mir-6681 precursor miRNA


Sequence

12 reads, 1 reads per million, 5 experiments
acaacucagagagacggucuggugcuUCUGGAUCGAGAAAUUCAGCAUgugcuggaaggauaaugcugaaugacucugauccuuugcugcccucuucuggcucuccuuuu
........(((((.(((...(((((....((((((((..(((((((((...((....))...)))))))))..))).)))))...)).))).....))).))))).....

Structure
acaacuca     a   --ucu   -  uUCU     -   AA         gug  g 
        gagag cgg     ggu gc    GGAUC GAG  AUUCAGCAU   cu g
        ||||| |||     ||| ||    ||||| |||  |||||||||   ||  
        cucuc guc     ccg cg    ccuag cuc  uaagucgua   gg a
---uuuuc     g   uucuc   u  -uuu     u   ag         aua  a 


Annotation confidence Not enough data
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Genome context
chr20: 8606306-8606415 [-]

Database links

Mature gga-miR-6681-5p

Accession MIMAT0025786
Description Gallus gallus gga-miR-6681-5p mature miRNA
Sequence 27 - UCUGGAUCGAGAAAUUCAGCAU - 48
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227