miRBase entry: gga-mir-6679

Stem-loop gga-mir-6679


Accession
MI0022499
Description
Gallus gallus gga-mir-6679 precursor miRNA


Sequence

caugugccgacugaguggugccucgUGGAAGAUAUGGUCAUCACUCUGUgagagucacuaacagugcaggaccaaucuuuugugagggaacugcuucuugcgaacuacca
.......((...(((((((.(((((((((((((.(((((..((((..((((...))))....))))...))))))))))))))))))..)))))))....))........

Structure
-caugugc  -acu       -g             A     -AU    --CU    g 
        cg    gaguggu  ccucgUGGAAGAU UGGUC   CACU    GUga  
        ||    |||||||  ||||||||||||| |||||   ||||    |||| a
        gc    uucguca  ggaguguuuucua accag   guga    cacu  
accaucaa  guuc       ag             -     gac    caau    g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 15621996-15622105 [-]

Database links

Mature gga-miR-6679-5p

Accession MIMAT0025783
Description Gallus gallus gga-miR-6679-5p mature miRNA
Sequence 26 - UGGAAGAUAUGGUCAUCACUCUGU - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227