miRBase entry: gga-mir-6645

Stem-loop gga-mir-6645


Accession
MI0022463
Description
Gallus gallus gga-mir-6645 precursor miRNA


Sequence

181 reads, 3 reads per million, 5 experiments
ugagcccuaguguccccaguuUGGGAGGUAGCAGUGGUGGUGAcaguggugguggugacacccccaacacucacccccacugcucucucccagggaugaggaaauucaga
((((.(((...(((((.....(((((((.((((((((.(((((...(((.((((....)))).)))....))))).)))))))).)))))))))))).)))...))))..

Structure
--    --c   agu     caguu       U        U     -cag   u    g 
  ugag   ccu   guccc     UGGGAGG AGCAGUGG GGUGA    ugg ggug u
  ||||   |||   |||||     ||||||| |||||||| |||||    ||| ||||  
  acuu   gga   uaggg     acccucu ucgucacc ccacu    acc ccac g
ag    aaa   --g     -----       c        c     caca   c    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr5: 39173710-39173819 [+]

Database links

Mature gga-miR-6645-5p

Accession MIMAT0025742
Description Gallus gallus gga-miR-6645-5p mature miRNA
Sequence 22 - UGGGAGGUAGCAGUGGUGGUGA - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227