miRBase entry: gga-mir-6625

Stem-loop gga-mir-6625


Accession
MI0022444
Description
Gallus gallus gga-mir-6625 precursor miRNA


Sequence

22 reads, 1 reads per million, 3 experiments
cuaacaucacggguagcuucuguccuUGGGGGAACUGGAAGCAAGAGUcaggagggaugcugauugcugguuucuaucuccccgcagcggcuggauugcagcaaucuccu
..............((((.((((.....(((((..(((((((.((((((((.(....).)))))).)).)))))))..))))))))).))))((((((...))))))...

Structure
----cuaacaucacgggu    u    ccuUG     AC       A  -      g g 
                  agcu cugu     GGGGA  UGGAAGC AG AGUcag a g
                  |||| ||||     |||||  ||||||| || |||||| |  
                  ucgg gacg     ccccu  aucuuug uc uuaguc u g
uccucuaacgacguuagg    c    -----     cu       g  g      g a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr10: 2314973-2315082 [-]

Database links

Mature gga-miR-6625-5p

Accession MIMAT0025721
Description Gallus gallus gga-miR-6625-5p mature miRNA
Sequence 27 - UGGGGGAACUGGAAGCAAGAGU - 48
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227