Stem-loop gga-mir-6620

Accession

MI0022439

Description

Gallus gallus gga-mir-6620 precursor miRNA

Sequence

gcagcgcagccgaccccgcAGAGAUGGAAGCGCUGCGCACGGugcguagcaaagaggggaucuggguaccgugugcgccccgucggggucccugagcccaucccaucccc
...((.(((..((((((.....(((((..(.((.(((((((((((.(((............))).))))))))))))))))))))))))).))).)).............

Structure

----------gca  g   cc      gcAGA     AA C  U           g   caaag 
             gc cag  gacccc     GAUGG  G GC GCGCACGGugc uag     a
             || |||  ||||||     |||||  | || ||||||||||| |||      
             cg guc  cugggg     cugcc  c cg cgugugccaug guc     g
ccccuacccuacc  a   -c      -----     -- -  -           g   uaggg 

Annotation confidence Not enough data

Genome context

chr25: 2809804-2809913 [+]

Mature gga-miR-6620-5p

• Accession: MIMAT0025716
• Description: Gallus gallus gga-miR-6620-5p mature miRNA
• Sequence: 20 - AGAGAUGGAAGCGCUGCGCACGG - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227