miRBase entry: gga-mir-6604

Stem-loop gga-mir-6604


Accession
MI0022423
Description
Gallus gallus gga-mir-6604 precursor miRNA


Sequence

27 reads, 1 reads per million, 5 experiments
gggcacccuguccuggaggcUGGCACGGUGCUAGGGAUUUCUGUgccagcaucuugcacugacucccuuguccugugccccaggaguggaagaggagguggcagaugugc
.(.((((((.((((((.....(((((((.((.(((((..((.((((.((...)).)))).)).))))).)).)))))))))))))..)).......)))).)........

Structure
-------g g    -------  -g      aggcU       U  U     UU  U    c  c 
        g cacc       cu  uccugg     GGCACGG GC AGGGA  UC GUgc ag  
        | ||||       ||  ||||||     ||||||| || |||||  || |||| || a
        c gugg       gg  aggacc     ccguguc ug ucccu  ag cacg uc  
cguguaga g    aggagaa  ug      -----       c  u     -c  u    u  u 


Annotation confidence Not enough data
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Genome context
chr6: 22353378-22353487 [+]

Database links

Mature gga-miR-6604-5p

Accession MIMAT0025698
Description Gallus gallus gga-miR-6604-5p mature miRNA
Sequence 21 - UGGCACGGUGCUAGGGAUUUCUGU - 44
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227