miRBase entry: gga-mir-6590

Stem-loop gga-mir-6590


Accession
MI0022410
Description
Gallus gallus gga-mir-6590 precursor miRNA


Sequence

31 reads, 1 reads per million, 2 experiments
uauguuucccuacaaguaguuuaaauaUGGGAUCAGGUGCUGAAAUAAGAcuacuucuuuauuUUACUUCUGUUCCUGAUCAUCAgcuggcugcagaaacagca
..((((((.......((((((......((((((((((.((.(((.(((((...........))))).))).)).))))))).)))...)))))).))))))...

Structure
-ua      ccuacaa      uaaaua   -       U  U   A     cuac 
   uguuuc       guaguu      UGG GAUCAGG GC GAA UAAGA    u
   ||||||       ||||||      ||| ||||||| || ||| |||||    u
   acaaag       cgucgg      ACU CUAGUCC UG CUU AUUuu    c
acg      ------a      ---ucg   A       U  U   C     auuu 


Annotation confidence Not enough data
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Genome context
chr5: 46491259-46491362 [-]

Database links

Mature gga-miR-6590-5p

Accession MIMAT0025682
Description Gallus gallus gga-miR-6590-5p mature miRNA
Sequence 28 - UGGGAUCAGGUGCUGAAAUAAGA - 50
Evidence experimental
Illumina [1]

Mature gga-miR-6590-3p

Accession MIMAT0025683
Description Gallus gallus gga-miR-6590-3p mature miRNA
Sequence 64 - UUACUUCUGUUCCUGAUCAUCA - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227