Stem-loop gga-mir-6556

Accession

MI0022375

Description

Gallus gallus gga-mir-6556 precursor miRNA

Sequence

1 reads, 0 reads per million, 1 experiments

gaugcgcagagagcucuccgggcggAAGGCUGCUCGGCCCGCGCUGCuccucgcguccuccgcgcGGCGGCGGUCCGAGCAGCUCCCgcucggucucagccguugc
((((.((.((((.....((((((((..((((((((((.(((((((((.....(((.....)))))))).)))).)))))))))).)))))))))))).))))))..

Structure

--    c  a    gcucu        AA          C    -     uccuc   u 
  gaug gc gaga     ccgggcgg  GGCUGCUCGG CCGC GCUGC     gcg c
  |||| || ||||     ||||||||  |||||||||| |||| |||||     ||| c
  uugc cg cucu     ggcucgCC  UCGACGAGCC GGCG CGGcg     cgc u
cg    -  a    -----        -C          U    G     -----   c 

Annotation confidence Not enough data

Genome context

chr9: 23720897-23721002 [-]

Mature gga-miR-6556-5p

• Accession: MIMAT0025621
• Description: Gallus gallus gga-miR-6556-5p mature miRNA
• Sequence: 26 - AAGGCUGCUCGGCCCGCGCUGC - 47
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6556-3p

• Accession: MIMAT0025622
• Description: Gallus gallus gga-miR-6556-3p mature miRNA
• Sequence: 66 - GGCGGCGGUCCGAGCAGCUCCC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227