Stem-loop sequence gga-mir-222b

Accession

MI0022373 (change log)

Description

Gallus gallus miR-222b stem-loop

Gene family

MIPF0000051; mir-221

Literature search

20 open access papers mention gga-mir-222b
(144 sentences)

Stem-loop

   ----g  a a     -----  c    cu             -     gau    --cc  c 
5'      ag c cggug     cc uugg  gcucaguagucag uguag   cugu    ga a
        || | |||||     || ||||  ||||||||||||| |||||   ||||    || g
3'      uc g gccac     gg aacc  ugggucauuaguc acauc   gaca    cu u
   guacg  - c     cacca  a    ac             u     ---    auca  c 

Deep sequencing

12774 reads, 60 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Database links

• RNAcentral:URS000075C980_9031
• miRBase Tracker:MI0022373

Mature sequence gga-miR-222b-5p

• Accession: MIMAT0025617
• Sequence: 20 - ugcucaguagucaguguaggaucugu - 45
• Deep sequencing: 685 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075E514_9031
• Predicted targets:
  • TargetScanVert:gga-miR-222b-5p
  • miRDB:gga-miR-222b-5p

Mature sequence gga-miR-222b-3p

• Accession: MIMAT0025618
• Sequence: 63 - agcuacaucugauuacugggucac - 86
• Deep sequencing: 12086 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075A2E6_9031
• Predicted targets:
  • TargetScanVert:gga-miR-222b-3p
  • miRDB:gga-miR-222b-3p

References

1. PMID:22418847 "Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation" Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH RNA Biol. 9:212-227(2012).