miRBase entry: gga-mir-222b

Stem-loop gga-mir-222b


Accession
MI0022373
Description
Gallus gallus gga-mir-222b precursor miRNA
Gene family
MIPF0000051; mir-221

Literature search
20 open access papers mention gga-mir-222b
(144 sentences)

Sequence

8787 reads, 100 reads per million, 5 experiments
gagacacggugcccuuggcUGCUCAGUAGUCAGUGUAGGAUCUGUccgacagucucacuaacAGCUACAUCUGAUUACUGGGUCACcaaaggaccaccaccgcgcugcaug
.((.(.(((((((.((((..((((((((((((((((((...((((...............))))))))).)))))))))))))..)))).)).....))))).))).....

Structure
----g  a a     -----  c    cU             -     GAU    ccgaca 
     ag c cggug     cc uugg  GCUCAGUAGUCAG UGUAG   CUGU      g
     || | |||||     || ||||  ||||||||||||| |||||   ||||      u
     uc g gccac     gg aacC  UGGGUCAUUAGUC ACAUC   GAca      c
guacg  - c     cacca  a    AC             U     ---    aucacu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature gga-miR-222b-5p

Accession MIMAT0025617
Description Gallus gallus gga-miR-222b-5p mature miRNA
Sequence 20 - UGCUCAGUAGUCAGUGUAGGAUCUGU - 45
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature gga-miR-222b-3p

Accession MIMAT0025618
Description Gallus gallus gga-miR-222b-3p mature miRNA
Sequence 63 - AGCUACAUCUGAUUACUGGGUCAC - 86
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227