Stem-loop sequence gga-mir-6548

AccessionMI0022365 (change log)
DescriptionGallus gallus miR-6548 stem-loop
Literature search

2 open access papers mention gga-mir-6548
(4 sentences)

Stem-loop 
   agca    a    uu  c  c a   --a       u c ug  -a   cu   aa 
5'     gugc uuuu  gc ag g uga   caacagc g g  cc  ugc  gua  u
       |||| ||||  || || | |||   ||||||| | |  ||  |||  |||   
3'     cacg aaag  cg uc c acu   guugucg c c  gg  acg  cau  c
   --ac    c    -u  -  a c   guc       c c gu  ag   ac   ac
Get sequence
Deep sequencing
58 reads, 0 reads per million, 3 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr14: 7328404-7328510 [-]
sense
ENSGALT00000010199 ; NSMCE1-201; intron 1
Database links

Mature sequence gga-miR-6548-5p

Accession MIMAT0025601
Sequence

26 -  

aacaacagcugcgugccaugcc

 - 47

Get sequence
Deep sequencing10 reads, 2 experiments
Evidence experimental; Illumina [1]
Predicted targets

Mature sequence gga-miR-6548-3p

Accession MIMAT0025602
Sequence

65 -  

agaggugccccgcuguugcugu

 - 86

Get sequence
Deep sequencing25 reads, 3 experiments
Evidence experimental; Illumina [1]
Predicted targets

References

1
PMID:22418847 "Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation" Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH RNA Biol. 9:212-227(2012).