Stem-loop sequence gga-mir-124c

Accession

MI0022364 (change log)

Description

Gallus gallus miR-124c stem-loop

Gene family

MIPF0000021; mir-124

Literature search

12 open access papers mention gga-mir-124c
(36 sentences)

Stem-loop

   u  cg   gg   a  c  -    g ca     c   ug    a   guau 
5'  gc  ccu  agg uc gc ucuu g  uucac gcg  ccuu auu    g
    ||  |||  ||| || || |||| |  ||||| |||  |||| |||    a
3'  cg  ggg  ucc ag cg agag c  aagug cgc  ggaa uaa    c
   g  -a   --   g  a  g    g ac     u   cu    c   auua 

Deep sequencing

337 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr2: 114701957-114702057 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-124c

• gga-mir-1714: chr2: 114704973-114705048 [+]
• gga-mir-124a: chr2: 114701964-114702059 [+]
• gga-mir-124c: chr2: 114701957-114702057 [-]

Database links

• miRBase Tracker:MI0022364

Mature sequence gga-miR-124c-5p

• Accession: MIMAT0025599
• Sequence: 26 - cauucaccgcgugccuuaauu - 46
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-124c-5p
  • miRDB:gga-miR-124c-5p

Mature sequence gga-miR-124c-3p

• Accession: MIMAT0025600
• Sequence: 60 - ucaagguccgcugugaacacgg - 81
• Deep sequencing: 335 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-124c-3p
  • miRDB:gga-miR-124c-3p

References

1. PMID:22418847 "Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation" Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH RNA Biol. 9:212-227(2012).