Stem-loop sequence bta-mir-2285t

Accession

MI0022348 (change log)

Description

Bos taurus miR-2285t stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

14 open access papers mention bta-mir-2285t
(24 sentences)

Stem-loop

   u      c                             uacc 
5'  auuggg uggccaaaaaguucguucagguuuuucug    a
    |||||| |||||||||||||||||||||||||||||     
3'  uaaccc accgguuuuucaaguaggucuaagaagac    g
   -      a                             cuuc 

Deep sequencing

7383 reads, 330 reads per million, 77 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr3: 7976721-7976803 [-]
• Overlapping transcripts:

  sense

  ENSBTAT00000065268 ; FCGR2-204; intron 4

  ENSBTAT00000029114 ; FCGR2-202; intron 5

  ENSBTAT00000048452 ; FCGR2-203; intron 5

  ENSBTAT00000029116 ; FCGR2-201; intron 7

Database links

• miRBase Tracker:MI0022348

Mature sequence bta-miR-2285t

• Accession: MIMAT0025577
• Sequence: 52 - agaaucuggaugaacuuuuugg - 73
• Deep sequencing: 950 reads, 76 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285t

References

1. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).