Stem-loop sequence bta-mir-2284aa-1

Accession

MI0022321 (change log)

Description

Bos taurus miR-2284aa-1 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

13 open access papers mention bta-mir-2284aa-1
(32 sentences)

Stem-loop

   --------------gguuuc    aa       ug          ccaug 
5'                     uggc  aaaaguu  uuuggguuuu     u
                       ||||  |||||||  ||||||||||      
3'                     accg  uuuucaa  aaacccaaaa     u
   uucagggguuuaauaacuca    ac       gu          accaa 

Deep sequencing

10743 reads, 46.6 reads per million, 73 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr11: 89597163-89597250 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0022321

Mature sequence bta-miR-2284aa

• Accession: MIMAT0025560
• Sequence: 11 - aaaaaaguuuguuuggguuuu - 31
• Deep sequencing: 42697 reads, 73 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2284aa

References

1. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).