Stem-loop sequence bta-mir-503

Accession

MI0022315 (change log)

Description

Bos taurus miR-503 stem-loop

Gene family

MIPF0000183; mir-503

Literature search

7 open access papers mention bta-mir-503
(26 sentences)

Stem-loop

   --  c g     ua                 g   ugg  a 
5'   ag c ugccc  gcagcgggaacaguacu cag   gc a
     || | |||||  ||||||||||||||||| |||   || u
3'   uc g acggg  cgucgucuuuguuauga guc   ug u
   gg  a a     cc                 g   uag  g 

Deep sequencing

13741 reads, 47.5 reads per million, 61 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 18288067-18288149 [-]
• Overlapping transcripts:

  sense

  ENSBTAT00000042463 ; bta-mir-503-201; exon 1

Clustered miRNAs

< 10kb from bta-mir-503

• bta-mir-424: chrX: 18288411-18288506 [-]
• bta-mir-503: chrX: 18288067-18288149 [-]
• bta-mir-3601: chrX: 18283115-18283192 [+]
• bta-mir-542: chrX: 18283105-18283201 [-]
• bta-mir-450a-2: chrX: 18282193-18282284 [-]
• bta-mir-450a-1: chrX: 18282042-18282123 [-]
• bta-mir-450b: chrX: 18281872-18281957 [-]

Database links

• RNAcentral:URS000075A9A3_9913
• miRBase Tracker:MI0022315

Mature sequence bta-miR-503-5p

• Accession: MIMAT0025557
• Sequence: 11 - uagcagcgggaacaguacug - 30
• Deep sequencing: 13552 reads, 32 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-503-5p

Mature sequence bta-miR-503-3p

• Accession: MIMAT0025558
• Sequence: 51 - ggaguauuguuucugcugcccgg - 73
• Deep sequencing: 189 reads, 59 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-503-3p

References

1. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).