miRBase entry: bta-mir-2285o-3

Stem-loop bta-mir-2285o-3


Accession
MI0022296
Description
Bos taurus bta-mir-2285o-3 precursor miRNA
Gene family
MIPF0000747; mir-2284

Literature search
11 open access papers mention bta-mir-2285o-3
(16 sentences)

Sequence

5443 reads, 12 reads per million, 68 experiments
guuaggugggccaaaaaauuuguuuggguuuuucuguaagaugguauggaaAAACCCGAACGAACUUUUGGgcccaccuaa
.(((((((((((.((((.((((((((((((((((((((......)))))))))))))))))))).)))).)))))))))))

Structure
g           a    a                    ag 
 uuaggugggcc aaaa uuuguuuggguuuuucugua  a
 ||||||||||| |||| ||||||||||||||||||||   
 aauccacccgG UUUU AAGCAAGCCCAAAaagguau  u
-           G    C                    gg 


Annotation confidence Not enough data
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Genome context
chr24: 33986931-33987011 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-2285o-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2285o

Accession MIMAT0025530
Description Bos taurus bta-miR-2285o mature miRNA
Sequence 52 - AAACCCGAACGAACUUUUGG - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026

  2. PubMed ID: 23100578
    Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
    "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
    "J Anim Sci (2013) 91:90-103