miRBase entry: bta-mir-154b

Stem-loop bta-mir-154b


Accession
MI0022293
Description
Bos taurus bta-mir-154b precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
10 open access papers mention bta-mir-154b
(53 sentences)

Sequence

588 reads, 20 reads per million, 58 experiments
guacuugaagAGAGGUCUUCCAUGGUGCAUUCGcuuuauucuuugacgaaucauacaugguugaccuuuuuuuagguauca
(((((((((((((((((..((((((((.((((((..........).)))))))).)))))..)))))))))))))))))..

Structure
--                 UU     -   C     - uuua 
  guacuugaagAGAGGUC  CCAUG GUG AUUCG c    u
  |||||||||||||||||  ||||| ||| ||||| |     
  uauggauuuuuuuccag  gguac uac uaagc g    u
ac                 uu     a   -     a uuuc 


Annotation confidence High
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Genome context
chr21: 67876730-67876810 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from bta-mir-154b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-154b

Accession MIMAT0025547
Description Bos taurus bta-miR-154b mature miRNA
Sequence 11 - AGAGGUCUUCCAUGGUGCAUUCG - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026