Stem-loop sequence bta-mir-2284y-3

Accession

MI0022286 (change log)

Description

Bos taurus miR-2284y-3 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

13 open access papers mention bta-mir-2284y-3
(33 sentences)

Stem-loop

   -      g     a        c   -        cag 
5'  ggguug ucaaa aguucguu ggg uuuuucau   a
    |||||| ||||| |||||||| ||| ||||||||    
3'  uccaac gguuu ucaagcaa ccc aaaaggua   u
   a      g     c        a   u        ugg 

Deep sequencing

71097 reads, 427 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr1: 83398242-83398317 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075EB83_9913
• miRBase Tracker:MI0022286

Mature sequence bta-miR-2284y

• Accession: MIMAT0024579
• Sequence: 11 - aaaaguucguucggguuuuuc - 31
• Deep sequencing: 491587 reads, 77 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2284y

References

1. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).