Stem-loop sequence bta-mir-2285o-1

Accession

MI0022270 (change log)

Description

Bos taurus miR-2285o-1 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

11 open access papers mention bta-mir-2285o-1
(15 sentences)

Stem-loop

   aua ga ug     a      a           cua  gag 
5'    g  u  gccaa gaguuc uuuggguuuuu   gu   c
      |  |  ||||| |||||| |||||||||||   ||   u
3'    c  a  cgguu uucaag aagcccaaaaa   ca   g
   uaa uc gu     -      c           --a  aau 

Deep sequencing

3465 reads, 10.8 reads per million, 65 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr12: 16589906-16589987 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-2285o-1

• bta-mir-2285av: chr12: 16589918-16589976 [+]
• bta-mir-2285o-1: chr12: 16589906-16589987 [-]

Database links

• miRBase Tracker:MI0022270

Mature sequence bta-miR-2285o

• Accession: MIMAT0025530
• Sequence: 53 - aaacccgaacgaacuuuugg - 72
• Deep sequencing: 17940 reads, 65 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285o

References

1. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).