miRBase entry: bta-mir-2285o-1

Stem-loop bta-mir-2285o-1


Accession
MI0022270
Description
Bos taurus bta-mir-2285o-1 precursor miRNA
Gene family
MIPF0000747; mir-2284

Literature search
11 open access papers mention bta-mir-2285o-1
(16 sentences)

Sequence

5077 reads, 6 reads per million, 62 experiments
auaggauuggccaaagaguucauuuggguuuuucuagugagcuguaaacaaaAAACCCGAACGAACUUUUGGcugacucaau
....((((((((((.((((((.(((((((((((...((.........)).))))))))))).)))))))))))))).))...

Structure
auag  -        a      a           cua  gag 
    ga uuggccaa gaguuc uuuggguuuuu   gu   c
    || |||||||| |||||| |||||||||||   ||   u
    cu agucGGUU UUCAAG AAGCCCAAAaa   ca   g
-uaa  c        -      C           --a  aau 


Annotation confidence Not enough data
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Genome context
chr12: 16589906-16589987 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-2285o-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2285o

Accession MIMAT0025530
Description Bos taurus bta-miR-2285o mature miRNA
Sequence 53 - AAACCCGAACGAACUUUUGG - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026