Stem-loop sequence ssc-mir-2411

Accession

MI0022164 (change log)

Description

Sus scrofa miR-2411 stem-loop

Gene family

MIPF0001571; mir-2411

Literature search

3 open access papers mention ssc-mir-2411
(9 sentences)

Stem-loop

   ----a    ca      -    ac  u   aug      --   ga 
5'      gagg  augugg agug  ug cag   cagcca  uca  a
        ||||  |||||| ||||  || |||   ||||||  |||  u
3'      cucc  uacacc ucau  ac guc   gucggu  agu  a
   accac    --      c    --  u   -aa      uu   gg 

Deep sequencing

94 reads, 0 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Sscrofa10.2; GCA_000003025.4)	Overlapping transcripts
chr4: 104285506-104285588 [-]	sense ENSSSCT00000032077 ; SNORA58.5-201; exon 1 ENSSSCT00000030928 ; SNORA58.4-201; exon 1 ENSSSCT00000027198 ; intron 11 ENSSSCT00000007178 ; intron 15
chr4: 104403861-104403943 [-]	sense ENSSSCT00000032077 ; SNORA58.5-201; exon 1 ENSSSCT00000030928 ; SNORA58.4-201; exon 1 ENSSSCT00000027198 ; intron 11 ENSSSCT00000007178 ; intron 15

Database links

• miRBase Tracker:MI0022164

Mature sequence ssc-miR-2411

• Accession: MIMAT0025389
• Sequence: 11 - uggagugacugucagaugcagc - 32
• Deep sequencing: 87 reads, 15 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).