Stem-loop sequence ssc-mir-671

Accession

MI0022155 (change log)

Description

Sus scrofa miR-671 stem-loop

Gene family

MIPF0000358; mir-671

Literature search

5 open access papers mention ssc-mir-671
(6 sentences)

Stem-loop

   --ca        a   a      ga           -u   g 
5'     ggaagagg gga gcccug  ggggcuggagg  gau g
       |||||||| ||| ||||||  |||||||||||  |||  
3'     ccuuuucc ccu cgggac  ucuuggccucc  uug a
   cggg        a   -      --           uu   u 

Deep sequencing

113 reads, 0 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr18: 6286693-6286772 [-]
• Overlapping transcripts:

  sense

  ENSSSCT00000020476 ; ssc-mir-671.2-201; exon 1

  ENSSSCT00000017897 ; ssc-mir-671.1-201; exon 4

Database links

• miRBase Tracker:MI0022155

Mature sequence ssc-miR-671-5p

• Accession: MIMAT0025381
• Sequence: 11 - aggaagcccuggaggggcuggagg - 34
• Deep sequencing: 111 reads, 11 experiments
• Evidence: experimental; Illumina [1]

Mature sequence ssc-miR-671-3p

• Accession: MIMAT0025382
• Sequence: 50 - uccgguucucagggcuccacc - 70
• Deep sequencing: 2 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).