Stem-loop sequence ssc-mir-489

Accession

MI0022150 (change log)

Description

Sus scrofa miR-489 stem-loop

Gene family

MIPF0000111; mir-489

Literature search

2 open access papers mention ssc-mir-489
(5 sentences)

Stem-loop

   u     c     g            gc c  u  a     g 
5'  ggcag uuggu gucguaugugug  g ca cu cuuga c
    ||||| ||||| ||||||||||||  | || || |||||  
3'  ucguc aaucg cggcauauacac  c gu ga ggauu g
   -     a     g            ua a  -  -     g 

Deep sequencing

3 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr9: 80161824-80161904 [-]
• Overlapping transcripts:

  sense

  ENSSSCT00000016693 ; CALCR-201; intron 1

  ENSSSCT00000020326 ; ssc-mir-489.1-201; exon 1

Database links

• miRBase Tracker:MI0022150

Mature sequence ssc-miR-489

• Accession: MIMAT0025375
• Sequence: 50 - agugacaucacauauacggcgg - 71
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).