Stem-loop sequence ssc-mir-452

Accession

MI0022149 (change log)

Description

Sus scrofa miR-452 stem-loop

Gene family

MIPF0000287; mir-452

Literature search

2 open access papers mention ssc-mir-452
(3 sentences)

Stem-loop

   -          aac g       ag  a       cuu   a 
5'  aagcacuuac   u uuugcag  ga acugaga   ugu a
    ||||||||||   | |||||||  || |||||||   |||  
3'  uucgugaaug   a aaacguc  cu ugacucu   aca c
   a          --a g       aa  c       ---   u 

Deep sequencing

374 reads, 0 reads per million, 14 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrX: 140861113-140861192 [-]
• Overlapping transcripts:

  sense

  ENSSSCT00000021034 ; ssc-mir-452.1-201; exon 1

  ENSSSCT00000013944 ; GABRE-201; intron 6

Clustered miRNAs

< 10kb from ssc-mir-452

• ssc-mir-452: chrX: 140861113-140861192 [-]
• ssc-mir-224: chrX: 140860060-140860140 [-]

Database links

• miRBase Tracker:MI0022149

Mature sequence ssc-miR-452

• Accession: MIMAT0025374
• Sequence: 11 - aacuguuugcagaggaaacuga - 32
• Deep sequencing: 283 reads, 13 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).