Stem-loop sequence ssc-mir-340-2

AccessionMI0022145 (change log)
DescriptionSus scrofa miR-340-2 stem-loop
Gene family MIPF0000191; mir-340
Literature search

2 open access papers mention ssc-mir-340-2
(4 sentences)

Stem-loop 
   -  u      au       -caa      u    g     ug 
5'  cc ggugug  uauaaag    ugagac gauu ucaua  u
    || ||||||  |||||||    |||||| |||| |||||  c
3'  gg ccauac  auauuuc    acucug cuag ggugu  g
   u  u      cg       auug      c    -     uu
Get sequence
Deep sequencing
8104 reads, 1.52e+03 reads per million, 15 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr2: 80137492-80137575 [+]
sense
ENSSSCT00000019704 ; ssc-mir-340-2.2-201; exon 1
Database links

Mature sequence ssc-miR-340

Accession MIMAT0013891
Sequence

11 -  

uuauaaagcaaugagacugauu

 - 32

Get sequence
Deep sequencing15784 reads, 15 experiments
Evidence experimental; Illumina [1-2]

References

1
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
2
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).