Stem-loop sequence ssc-mir-339-2

Accession

MI0022144 (change log)

Description

Sus scrofa miR-339-2 stem-loop

Literature search

7 open access papers mention ssc-mir-339-2
(7 sentences)

Stem-loop

   uaag   -a  ucc  g     ca     u   ggucca   ga 
5'     aca  gg   cu uccuc  ggagc cau      aua  a
       |||  ||   || |||||  ||||| |||      |||   
3'     ugu  cc   ga gggag  ucucg gua      uau  g
   ucgg   cg  cua  g     --     -   aacaua   ac 

Deep sequencing

14121 reads, 1.94e+03 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Sscrofa10.2; GCA_000003025.4)	Overlapping transcripts
chr1: 181756284-181756369 [-]	intergenic
chrUScaf3389: 105390-105475 [+]	intergenic

Database links

• miRBase Tracker:MI0022144

Mature sequence ssc-miR-339

• Accession: MIMAT0025372
• Sequence: 11 - ucccuguccuccaggagcuca - 31
• Deep sequencing: 14121 reads, 15 experiments
• Evidence: experimental; Illumina [1-2]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
2. PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).