Stem-loop sequence ssc-mir-196a-1

Accession

MI0022138 (change log)

Description

Sus scrofa miR-196a-1 stem-loop

Gene family

MIPF0000031; mir-196

Literature search

16 open access papers mention ssc-mir-196a-1
(103 sentences)

Stem-loop

   -   -a    a ua   a    c         - gc u  a 
5'  cug  guga u  ggu guuu auguuguug g  c gg u
    |||  |||| |  ||| |||| ||||||||| |  | ||  
3'  gac  cacu a  cca caaa uacagcaac c  g uc u
   u   gg    c gc   c    u         a aa -  u 

Deep sequencing

5 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr12: 24836774-24836853 [+]
• Overlapping transcripts:

  sense

  ENSSSCT00000021429 ; ssc-mir-196a-1.1-201; exon 1

Database links

• miRBase Tracker:MI0022138

Mature sequence ssc-miR-196a

• Accession: MIMAT0002163
• Previous IDs: ssc-miR-196
• Sequence: 11 - uagguaguuucauguuguuggg - 32
• Deep sequencing: 15 reads, 5 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).